PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085728001
Common NameGSBRNA2T00085728001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 268aa    MW: 29842.7 Da    PI: 4.7662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085728001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-17104153254
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                           y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  GSBRNA2T00085728001 104 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 153
                          69*******.**********44465..*********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.89E-29103163No hitNo description
SMARTSM003806.6E-36104168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-29104163IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21104164IPR016177DNA-binding domain
PfamPF008472.0E-11104151IPR001471AP2/ERF domain
PROSITE profilePS5103221.931104162IPR001471AP2/ERF domain
PRINTSPR003674.7E-10105116IPR001471AP2/ERF domain
PRINTSPR003674.7E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEYSQSTMYS SPSSWSSSQE SFLWNESSFL DPSSNHQSFF SADYIYSDDS NHQSFFCPND  60
NYSIDFFSFE SPEMIIKEET PNADVSNSEE EEEKIGSVID EEKSYRGVRK RPWGKFAAEI  120
RDSTRNGIRV WLGTFDKAEE AALAYDQAAF ATKGSLAVLN FPVEVVRESL KKMENVNLED  180
GGSPIMALKR KHSLRNRPRG KKRSSNSLSC SSNSPSNSSS STSSSSSSST SRLRNVKQSV  240
VKQESGTLVV FEDLGAEYLE QLLMSSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28103165163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085728001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634535.10.0PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM01e-117ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A078FRC80.0A0A078FRC8_BRANA; BnaC04g42060D protein
TrEMBLA0A0D3C3D60.0A0A0D3C3D6_BRAOL; Uncharacterized protein
STRINGBra021712.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-102ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]